Week 3

Agenda for (02/01/2023)

• Introduction to sequence assembly and genome assemblers

• Demos:

  • Unix demo: navigating directory structures and file systems

  • Jupyter lab

• Lab exercises

  • troubleshoot last week’s exercises (if needed)

  • microbial genome assembly using SPAdes

  • obtain assembly metrics using Quast

  • try connecting to Cerberus and install some tools