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   "source": [
    "# Week 2"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Plans for (01/25/2023)\n",
    "\n",
    "  - Introduction to sequencing technologies and bioinformatic tools\n",
    "  - Troubleshoot `conda` and `jupyter-lab` related issues\n",
    "  - Install some necessary tools using `conda`:\n",
    "    - sra-tools\n",
    "    - fastqc\n",
    "    - bbmap\n",
    "  - Group activity to download and test tools with sample datasets\n",
    "\n",
    "\n",
    "  - Assignments:\n",
    "    - Assignment 1\n",
    "    - Reading assignments"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Introduction to sequencing technologies and some bioinformatic tools"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "See the Powerpoint presentation given in class. It will be uploaded to Blackboard as well."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Troubleshoot `conda` and `jupyter-lab` related issues"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "We will revisit the exercises from last week and I will help you along with installing and troubleshooting other issues related to setting up the computing environment to get you ready for the exercises."
   ]
  }
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